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TFS - Server Side Cache Problem on Project Collection Basis

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Hi, 
There are two project collections in TFS server we set up before. In the second collection, I' ve created a custom process template. And the link types of Test Case work item were limited due to the requests. So, Shared Step and Shared Parameter named link types was removed from the definition of Test Case work item. The decision has been changed, after that, I've put the relation types( Shared Step & Shared Parameter ) into the definition of Test Case again. But It is not listed in the projects after uploading the laast definition. I've tried to explore the reasons behind ot this non-working scenario. I've uploaded the custom process template into the other project collection for the first time, and when created a new project with this template, the link types were represented. Most probably, It is a server side cache problem ! I've restarted the server two times, and cleared the cache held in the following location ;

C:\TfsData\ApplicationTier\_fileCache

But none of them solved my problem. This is the second time I've faced cache problem on project collection basis. Could you plase help me to solve this type of problems ? I think it is a big problem, and my colleuges are waiting me to solve this problem just to be able to create Test Cases. Is there any way of solution which can be applied ? The first thing I would like to learn which type of data held and where is it ? There must be something which prevents the work item link types update somewhow. Additionally, in database side , is there any data which can cause this sort of problems ?

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