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TFS 2013 check in only some files

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Hi all, I am really new in TFS and I really need big help on how to increase debugging level for TFS (Check in).

I installed TFS 2013 on Win 2012 Server last year and until now I didn't have any issues. Developers are checking in, bugs are entered via Sharepoint sites .... wonderful.

Yesterday I got a message from one of the developers saying that he performed check in from home, but when performed get latest on new machine (at work) he got all the files but somehow not the most recent one. Some were recent and some not. Just to test it I created new test project, developer uploaded version from his home and performed get latest at work and everything is fine. So something happened during check in. Because I don't have anything in Event viewer, I looked in log files  C:\inetpub\logs\LogFiles\W3SVC3 and there everything is OK. Sample is below

#Fields: date time s-ip cs-method cs-uri-stem cs-uri-query s-port cs-username c-ip cs(User-Agent) cs(Referer) sc-status sc-substatus sc-win32-status time-taken
2014-11-10 07:55:30 192.168.107.144 POST /tfs/projects/Services/v3.0/LocationService.asmx - 8080 - 192.168.2.105 Team+Foundation+(devenv.exe,+12.0.30723.0,+Pro,+SKU:15) - 401 2 5 3335
2014-11-10 07:55:30 192.168.107.144 POST /tfs/projects/Services/v3.0/LocationService.asmx - 8080 domain\user 192.168.2.105 Team+Foundation+(devenv.exe,+12.0.30723.0,+Pro,+SKU:15) - 200 0 0 614

not sure why user was not authenticated right away and I suppose this is why 401 error in the first line, but afterwards everything looks ok (200)

In TFS admin Console under Logs last log was created on 29.08.2014. So nothing there either. 

Can you please help ? How to increase logging level and do you have any suggestion what to do?

Since I created new project and check in was successful, can you tell me if it is possible to transfer entire history and sharepoint bugs, issues ..... to new project?

Thanks


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